diff --git a/BaseTools/Source/Python/AutoGen/GenMake.py b/BaseTools/Source/Python/AutoGen/GenMake.py
index 5802ae5ae4..499ef82aea 100644
--- a/BaseTools/Source/Python/AutoGen/GenMake.py
+++ b/BaseTools/Source/Python/AutoGen/GenMake.py
@@ -906,8 +906,14 @@ cleanlib:
                                     self._AutoGenObject.IncludePathList + self._AutoGenObject.BuildOptionIncPathList
                                     )
 
+        # Get a set of unique package includes from MetaFile
+        parentMetaFileIncludes = set()
+        for aInclude in self._AutoGenObject.PackageIncludePathList:
+            aIncludeName = str(aInclude)
+            parentMetaFileIncludes.add(aIncludeName.lower())
+
         # Check if header files are listed in metafile
-        # Get a list of unique module header source files from MetaFile
+        # Get a set of unique module header source files from MetaFile
         headerFilesInMetaFileSet = set()
         for aFile in self._AutoGenObject.SourceFileList:
             aFileName = str(aFile)
@@ -915,24 +921,37 @@ cleanlib:
                 continue
             headerFilesInMetaFileSet.add(aFileName.lower())
 
-        # Get a list of unique module autogen files
+        # Get a set of unique module autogen files
         localAutoGenFileSet = set()
         for aFile in self._AutoGenObject.AutoGenFileList:
             localAutoGenFileSet.add(str(aFile).lower())
 
-        # Get a list of unique module dependency header files
+        # Get a set of unique module dependency header files
         # Exclude autogen files and files not in the source directory
+        # and files that are under the package include list
         headerFileDependencySet = set()
         localSourceDir = str(self._AutoGenObject.SourceDir).lower()
         for Dependency in FileDependencyDict.values():
             for aFile in Dependency:
                 aFileName = str(aFile).lower()
+                # Exclude non-header files
                 if not aFileName.endswith('.h'):
                     continue
+                # Exclude autogen files
                 if aFileName in localAutoGenFileSet:
                     continue
+                # Exclude include out of local scope
                 if localSourceDir not in aFileName:
                     continue
+                # Exclude files covered by package includes
+                pathNeeded = True
+                for aIncludePath in parentMetaFileIncludes:
+                    if aIncludePath in aFileName:
+                        pathNeeded = False
+                        break
+                if not pathNeeded:
+                    continue
+                # Keep the file to be checked
                 headerFileDependencySet.add(aFileName)
 
         # Ensure that gModuleBuildTracking has been initialized per architecture
diff --git a/BaseTools/Source/Python/AutoGen/ModuleAutoGen.py b/BaseTools/Source/Python/AutoGen/ModuleAutoGen.py
index 0654b11ad8..9ecf5c2dbe 100644
--- a/BaseTools/Source/Python/AutoGen/ModuleAutoGen.py
+++ b/BaseTools/Source/Python/AutoGen/ModuleAutoGen.py
@@ -1113,6 +1113,21 @@ class ModuleAutoGen(AutoGen):
     def IncludePathLength(self):
         return sum(len(inc)+1 for inc in self.IncludePathList)
 
+    ## Get the list of include paths from the packages
+    #
+    #   @IncludesList     list             The list path
+    #
+    @cached_property
+    def PackageIncludePathList(self):
+        IncludesList = []
+        for Package in self.Module.Packages:
+            PackageDir = mws.join(self.WorkspaceDir, Package.MetaFile.Dir)
+            IncludesList = Package.Includes
+            if Package._PrivateIncludes:
+                if not self.MetaFile.Path.startswith(PackageDir):
+                    IncludesList = list(set(Package.Includes).difference(set(Package._PrivateIncludes)))
+        return IncludesList
+
     ## Get HII EX PCDs which maybe used by VFR
     #
     #  efivarstore used by VFR may relate with HII EX PCDs