diff --git a/BaseTools/Source/Python/GenFds/EfiSection.py b/BaseTools/Source/Python/GenFds/EfiSection.py
index 7e6c88a059..5bb1ae6f66 100644
--- a/BaseTools/Source/Python/GenFds/EfiSection.py
+++ b/BaseTools/Source/Python/GenFds/EfiSection.py
@@ -1,7 +1,7 @@
 ## @file
 # process rule section generation
 #
-#  Copyright (c) 2007 - 2017, Intel Corporation. All rights reserved.<BR>
+#  Copyright (c) 2007 - 2018, Intel Corporation. All rights reserved.<BR>
 #
 #  This program and the accompanying materials
 #  are licensed and made available under the terms and conditions of the BSD License
@@ -64,6 +64,7 @@ class EfiSection (EfiSectionClassObject):
             Filename = FfsInf.__ExtendMacro__(self.FileName)
             BuildNum = FfsInf.__ExtendMacro__(self.BuildNum)
             StringData = FfsInf.__ExtendMacro__(self.StringData)
+            ModuleNameStr = FfsInf.__ExtendMacro__('$(MODULE_NAME)')
             NoStrip = True
             if FfsInf.ModuleType in ('SEC', 'PEI_CORE', 'PEIM') and SectionType in ('TE', 'PE32'):
                 if FfsInf.KeepReloc is not None:
@@ -91,8 +92,9 @@ class EfiSection (EfiSectionClassObject):
                 FileList.append(Filename)
             elif os.path.exists(Filename):
                 FileList.append(Filename)
-            elif '.depex' in FfsInf.FinalTargetSuffixMap or FfsInf.Depex:
-                if IsMakefile:
+            elif IsMakefile:
+                SuffixMap = FfsInf.GetFinalTargetSuffixMap()
+                if '.depex' in SuffixMap:
                     FileList.append(Filename)
         else:
             FileList, IsSect = Section.Section.GetFileList(FfsInf, self.FileType, self.FileExtension, Dict, IsMakefile=IsMakefile)
@@ -179,6 +181,8 @@ class EfiSection (EfiSectionClassObject):
 
             if InfOverrideUiString:
                 Num = SecNum
+                if IsMakefile and StringData == ModuleNameStr:
+                    StringData = "$(MODULE_NAME)"
                 OutputFile = os.path.join( OutputPath, ModuleName + 'SEC' + str(Num) + Ffs.SectionSuffix.get(SectionType))
                 GenFdsGlobalVariable.GenerateSection(OutputFile, [], 'EFI_SECTION_USER_INTERFACE',
                                                      Ui=StringData, IsMakefile=IsMakefile)
@@ -192,6 +196,8 @@ class EfiSection (EfiSectionClassObject):
                     f = open(File, 'r')
                     UiString = f.read()
                     f.close()
+                    if IsMakefile and UiString == ModuleNameStr:
+                        UiString = "$(MODULE_NAME)"
                     GenFdsGlobalVariable.GenerateSection(OutputFile, [], 'EFI_SECTION_USER_INTERFACE',
                                                         Ui=UiString, IsMakefile=IsMakefile)
                     OutputFileList.append(OutputFile)
@@ -208,6 +214,8 @@ class EfiSection (EfiSectionClassObject):
                         EdkLogger.error("GenFds", GENFDS_ERROR, "File: %s miss UI Section value" %InfFileName)
 
                 Num = SecNum
+                if IsMakefile and StringData == ModuleNameStr:
+                    StringData = "$(MODULE_NAME)"
                 OutputFile = os.path.join( OutputPath, ModuleName + 'SEC' + str(Num) + Ffs.SectionSuffix.get(SectionType))
                 GenFdsGlobalVariable.GenerateSection(OutputFile, [], 'EFI_SECTION_USER_INTERFACE',
                                                      Ui=StringData, IsMakefile=IsMakefile)
diff --git a/BaseTools/Source/Python/GenFds/FfsInfStatement.py b/BaseTools/Source/Python/GenFds/FfsInfStatement.py
index 0dbffffc9a..5364569b96 100644
--- a/BaseTools/Source/Python/GenFds/FfsInfStatement.py
+++ b/BaseTools/Source/Python/GenFds/FfsInfStatement.py
@@ -502,9 +502,11 @@ class FfsInfStatement(FfsInfStatementClassObject):
         # For the rule only has simpleFile
         #
         MakefilePath = None
+        if self.IsBinaryModule:
+            IsMakefile = False
         if IsMakefile:
             MakefilePath = self.InfFileName, Arch
-        if isinstance (Rule, RuleSimpleFile.RuleSimpleFile) :
+        if isinstance (Rule, RuleSimpleFile.RuleSimpleFile):
             SectionOutputList = self.__GenSimpleFileSection__(Rule, IsMakefile=IsMakefile)
             FfsOutput = self.__GenSimpleFileFfs__(Rule, SectionOutputList, MakefilePath=MakefilePath)
             return FfsOutput
diff --git a/BaseTools/Source/Python/GenFds/GenFdsGlobalVariable.py b/BaseTools/Source/Python/GenFds/GenFdsGlobalVariable.py
index fcb191981c..2f9d58f6bf 100644
--- a/BaseTools/Source/Python/GenFds/GenFdsGlobalVariable.py
+++ b/BaseTools/Source/Python/GenFds/GenFdsGlobalVariable.py
@@ -464,9 +464,11 @@ class GenFdsGlobalVariable:
         if Ui not in [None, '']:
             #Cmd += ["-n", '"' + Ui + '"']
             if IsMakefile:
-                Cmd += ["-n", "$(MODULE_NAME)"]
+                if Ui == "$(MODULE_NAME)":
+                    Cmd += ['-n', Ui]
+                else:
+                    Cmd += ["-n", '"' + Ui + '"']
                 Cmd += ["-o", Output]
-                #SaveFileOnChange(CommandFile, ' '.join(Cmd), False)
                 if ' '.join(Cmd).strip() not in GenFdsGlobalVariable.SecCmdList:
                     GenFdsGlobalVariable.SecCmdList.append(' '.join(Cmd).strip())
             else:
diff --git a/BaseTools/Source/Python/GenFds/GuidSection.py b/BaseTools/Source/Python/GenFds/GuidSection.py
index 8362073f97..08665a3d4d 100644
--- a/BaseTools/Source/Python/GenFds/GuidSection.py
+++ b/BaseTools/Source/Python/GenFds/GuidSection.py
@@ -1,7 +1,7 @@
 ## @file
 # process GUIDed section generation
 #
-#  Copyright (c) 2007 - 2017, Intel Corporation. All rights reserved.<BR>
+#  Copyright (c) 2007 - 2018, Intel Corporation. All rights reserved.<BR>
 #
 #  This program and the accompanying materials
 #  are licensed and made available under the terms and conditions of the BSD License
@@ -272,6 +272,8 @@ class GuidSection(GuidSectionClassObject) :
                 self.Alignment = None
                 self.IncludeFvSection = False
                 self.ProcessRequired = "TRUE"
+            if IsMakefile and self.Alignment.strip() == '0':
+                self.Alignment = '1'
             return OutputFileList, self.Alignment
 
 
diff --git a/BaseTools/Source/Python/Trim/Trim.py b/BaseTools/Source/Python/Trim/Trim.py
index d07edbd5d8..3eb7fa3920 100644
--- a/BaseTools/Source/Python/Trim/Trim.py
+++ b/BaseTools/Source/Python/Trim/Trim.py
@@ -1,7 +1,7 @@
 ## @file
 # Trim files preprocessed by compiler
 #
-# Copyright (c) 2007 - 2017, Intel Corporation. All rights reserved.<BR>
+# Copyright (c) 2007 - 2018, Intel Corporation. All rights reserved.<BR>
 # This program and the accompanying materials
 # are licensed and made available under the terms and conditions of the BSD License
 # which accompanies this distribution.  The full text of the license may be found at
@@ -437,7 +437,7 @@ def GenerateVfrBinSec(ModuleName, DebugDir, OutputFile):
         for CurrentDir, Dirs, Files in os.walk(DebugDir):
             for FileName in Files:
                 Name, Ext = os.path.splitext(FileName)
-                if Ext == '.lst':
+                if Ext == '.c' and Name != 'AutoGen':
                     VfrNameList.append (Name + 'Bin')
 
     VfrNameList.append (ModuleName + 'Strings')