Minor cleanups, including comment about -c option (deprecated soon)

include/parameters

@@ -49,12 +49,12 @@
                             fi
                         ;;
                         "system")
+                            CHECK=1
                             CHECK_BINARIES=1
                             HELPER=""
                             RUN_PLUGINS=1
                             RUN_TESTS=1
                             shift
-                            #break
                         ;;
                     esac
                   else
@@ -65,7 +65,6 @@
                     echo "lynis audit system"
                     ExitFatal
                 fi
-                #break
             ;;
 
             show)
@@ -121,8 +120,9 @@
              AUDITORNAME=$1
           ;;
 
-          # Perform tests
+          # Perform tests (deprecated, use audit system)
           -c | --check-all | --checkall)
+             # echo "Usage of option -c is deprecated. Please use: lynis audit system [options]"
              CHECK=1
           ;;